Structure of PDB 6ddg Chain M

Receptor sequence
>6ddgM (length=56) Species: 1280 (Staphylococcus aureus) [Search protein sequence]
AKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVK
HLVTVE
3D structure
PDB6ddg cryoEM-Guided Development of Antibiotics for Drug-Resistant Bacteria.
ChainM
Resolution3.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna M R10 S11 I13 G14 R20 K21 T22 E24 A25 T31 N32 N40 A42 G45 Q46 R9 S10 I12 G13 R19 K20 T21 E23 A24 T30 N31 N39 A41 G44 Q45
BS02 rna M R15 Q19 R14 Q18
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ddg, PDBe:6ddg, PDBj:6ddg
PDBsum6ddg
PubMed30667174
UniProtP0A0G2|RL30_STAA8 Large ribosomal subunit protein uL30 (Gene Name=rpmD)

[Back to BioLiP]