Structure of PDB 5ylz Chain M

Receptor sequence
>5ylzM (length=185) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
DEINEPPPNICEQCLGDEANIRMTKIPQGSECKICTLPFTLYHFKTSKRS
NNIIKTLICVRCATQRNICQCCMLDSRWHIPIQLRDHLISLVNEENVMTE
EAKNDMMKRFLSLKNVKLGGAQITTKSFFLYNIDASIPEWKITDTVSQLL
SLIVNHKAKCGGLRFQSSELGERFVSIFIIPWSSG
3D structure
PDB5ylz Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae
ChainM
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna M I28 H45 K47 R51 N53 M108 I26 H43 K45 R49 N51 M106
BS02 ZN M C13 C71 C74 C11 C69 C72
BS03 ZN M C34 C37 C61 C64 C32 C35 C59 C62
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0017070 U6 snRNA binding
GO:0036002 pre-mRNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0071006 U2-type catalytic step 1 spliceosome
GO:0071007 U2-type catalytic step 2 spliceosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:5ylz, PDBe:5ylz, PDBj:5ylz
PDBsum5ylz
PubMed29153833
UniProtP38241|SLT11_YEAST Pre-mRNA-splicing factor SLT11 (Gene Name=ECM2)

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