Structure of PDB 5vsw Chain M

Receptor sequence
>5vswM (length=140) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
LSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTH
MQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDF
GYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG
3D structure
PDB5vsw Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA.
ChainM
Resolution4.295 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN M C114 C138 C103 C127
BS02 G4P M R91 K94 L95 K98 K139 R80 K83 L84 K87 K128
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
GO:0097216 guanosine tetraphosphate binding
Biological Process
GO:0006302 double-strand break repair
GO:0010468 regulation of gene expression
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5vsw, PDBe:5vsw, PDBj:5vsw
PDBsum5vsw
PubMed29478808
UniProtP0ABS1|DKSA_ECOLI RNA polymerase-binding transcription factor DksA (Gene Name=dksA)

[Back to BioLiP]