Structure of PDB 5t61 Chain M

Receptor sequence

>5t61M (length=568) Species: 145261 (Methanothermobacter wolfeii)

EYIIKNGFVYCPLNGVDGEKMDICVKDGKIVESVSDSAKVIDASGKIVMP
GGVDPHSHIAGAKVNVGRMYRPEDSKRDAEKFKGGRAGSGFSVPSTFMTG
YRYAQMGYTTAMEAAMPPLLARHTHEEFHDTPIIDHAAYPLFGNNWFVME
YLKEGDVDACAAYASWLLRATKGYTIKIVNPAGTEAWGWGGNVHGIYDPA
PYFDITPAEIIKGLAEVNEKLQLPHSIHLHCNDLGHPGNYETTLASFDVP
KNIKPNPATGSRDTVLYATHVQFHSYGGTTWRDFVSEAPKIADYVNKNDH
IVIDVGQITLDETTTMTADGPMEYDLHSLNGLKWANCDVELETGSGVVPF
IYSARAPVPAVQWAIGMELFLLIDNPEKVCLTTDSPNAGPFTRYPRVIAW
LMSNKYRMNLIEGELHKWAQRKSTVATIDREYTFSEIAQITRATSAKVLG
LSDTKGHLGVGADADIAVYDINPETVDPSAEYMAIEEAFSRAACVLKDGE
IVVKDGEVVASPHGRTYWVDTQVDESIYSEVLANVESKFKQYYSVNFANY
PVQDDYLPKSAPVKGVML

3D structure

• PDB: 5t61 The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.
• Chain: M
• Resolution: 2.55 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	ZN	M	K178 H231 H271	K177 H230 H270
BS02	ZN	M	H57 H59 K178 D385	H56 H58 K177 D384
BS03	MFN	M	H231 H271 F274 W282 R283 T316 M323 L327 L330 F351 Y353 V359 D385 N388 H417	H230 H270 F273 W281 R282 T315 M322 L326 L329 F350 Y352 V358 D384 N387 H416

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Dec 3 04:26:24 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5t61', asym_id = 'M', title = 'The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5t61', asym_id='M', title='The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0016810', uniprot = '', pdbid = '5t61', asym_id = 'M'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016810', uniprot='', pdbid='5t61', asym_id='M')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>