Structure of PDB 5mpa Chain M

Receptor sequence
>5mpaM (length=381) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
TQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLP
YLVANVVEVMDKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSY
LILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKR
ADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ
MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQR
TMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS
EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL
RNGQSSVKHEDFVEGISEVQARKSKSVSFYA
3D structure
PDB5mpa Structural insights into the functional cycle of the ATPase module of the 26S proteasome.
ChainM
Resolution4.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP M R339 R342 R286 R289
BS02 ATP M G184 P224 G225 T226 G227 K228 T229 L230 H364 G131 P171 G172 T173 G174 K175 T176 L177 H311
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0036402 proteasome-activating activity
Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0010604 positive regulation of macromolecule metabolic process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0070682 proteasome regulatory particle assembly
GO:1901800 positive regulation of proteasomal protein catabolic process
Cellular Component
GO:0000502 proteasome complex
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0008540 proteasome regulatory particle, base subcomplex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5mpa, PDBe:5mpa, PDBj:5mpa
PDBsum5mpa
PubMed28115689
UniProtP33297|PRS6A_YEAST 26S proteasome regulatory subunit 6A (Gene Name=RPT5)

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