Structure of PDB 5lqw Chain M

Receptor sequence
>5lqwM (length=169) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
TDQIAKNVKLDDFIPKELSVPLPTKAEIQECTARTKSYIQRLVNAKLANS
SRYVTETHSHHIEVVSKQMDPLLPRFVGKKARKVVAPTENDEVVPVLHMD
GSNDRGEADPNEWKIPAAVSNWKNPNGNNTINDGFMKLSEALENADKKAR
QEIRSKMELKRLAMEQEML
3D structure
PDB5lqw Molecular architecture of the Saccharomyces cerevisiae activated spliceosome
ChainM
Resolution5.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna M N176 G177 N126 G127
Gene Ontology
Molecular Function
GO:0000384 first spliceosomal transesterification activity
GO:0000386 second spliceosomal transesterification activity
GO:0005515 protein binding
Biological Process
GO:0000350 generation of catalytic spliceosome for second transesterification step
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0071006 U2-type catalytic step 1 spliceosome
GO:0071007 U2-type catalytic step 2 spliceosome
GO:0071014 post-mRNA release spliceosomal complex

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Cellular Component
External links
PDB RCSB:5lqw, PDBe:5lqw, PDBj:5lqw
PDBsum5lqw
PubMed27562955
UniProtP28004|PRP45_YEAST Pre-mRNA-processing protein 45 (Gene Name=PRP45)

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