Structure of PDB 5iio Chain M

Receptor sequence
>5iioM (length=327) Species: 9606 (Homo sapiens) [Search protein sequence]
ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQE
ACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKT
AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQT
VQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLL
DSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSE
FACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPG
RVLPTPTEKDVFRLLGLPYREPAERDW
3D structure
PDB5iio A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
ChainM
Resolution2.08 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D427 D429 D490
Catalytic site (residue number reindexed from 1) D179 D181 D242
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
4.2.99.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna M Q469 R549 Q221 R301
BS02 dna M W274 E465 E466 Y505 R517 K521 W26 E217 E218 Y257 R269 K273
BS03 dna M W342 G343 A344 G345 K347 T348 W94 G95 A96 G97 K99 T100
BS04 dna M Y267 W274 R275 G278 Y279 P303 G304 G306 R308 M309 K312 Y19 W26 R27 G30 Y31 P55 G56 G58 R60 M61 K64
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0034061 DNA polymerase activity
Biological Process
GO:0006281 DNA repair

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Molecular Function
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Biological Process
External links
PDB RCSB:5iio, PDBe:5iio, PDBj:5iio
PDBsum5iio
PubMed27481934
UniProtQ9UGP5|DPOLL_HUMAN DNA polymerase lambda (Gene Name=POLL)

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