Structure of PDB 5fq6 Chain M

Receptor sequence
>5fq6M (length=948) Species: 818 (Bacteroides thetaiotaomicron) [Search protein sequence]
EKALGYAATSVGGEKIAESRTSDVMSSLAGKIAGVQISSTSSDPGASNSV
IIRGVSSLSGTNQPLYVVDGVPLNNSTVYSTDGLNSGYDFGNGANAINPD
DVANMTILKGAAATALYGSRAANGVVMITTKSGRKEKGVGIEYNGGVQWS
TVLRLPEFQNEFGMGWNGNHTELENGSWGPRFDGSMQLWGNVYNNSQKLK
PYVAMPDNIKDFFDAGFRYSNSLSFNGATDKSDYYVSFSQISDDGMIPTD
ADSYDKYTFSARGSHKAGALTFSSSLNYAYQKNNFATTGQGLSMLNSLYQ
TPRDISIIGLEDQNDPFNTPGYYYTPYGVMNPYYILNNYLNEYESERFYG
KFQLDYEFLKYFKFTYRMGLDTTTGQSDKGKPNLYALYYEGTPNGEGQGS
SSPFSGETGQYSEQITRRREINQDIMVNFNMPVNDFNINALVGFNGNERK
VSYQYSEVNDLTIPTWFNLKNSGKTPIVEQHMELRRLMGVFGQFEGSWKN
MLYLTVTARNDWSSTLPKENRSFFYPGITGSFIFSELLNDNLQDVITFGK
IRASWGKTGNDADVYMVNPVYAQSSNRIPFGSLTFPLGGVNAYSAGNVLG
SNTLSPEMTTESEVGLNMAFFKNRLSFDVSYYNRNTDKQIFSLAMDPASG
YTAQNMNLGKIRNRGIELLISGTPIRTKDFSWELTWNFTKNWSKVISLPE
ELGGITTIYGLNGGTSMYAITGMPVGVFKAQVAERDPQGRIVVNSSTGLP
VEASEFGICGDMNNKYQMGVSTNLKYKGISLGIDFDIRQGGVMYSRTKDI
NYFTGNAIQTAYNDRNPLIVPNSVNKIVNGENVTYVENTTPITSSNIYKY
WGDGGSDMGSCFLVDKSYVKLRSVVLGWDLPKRWLAKTPFQAVKVSAYGN
NLFVWTPSSNTFIDPEMTSFGNDLEGNYGEYTANPSSRRFGFNLMVKF
3D structure
PDB5fq6 Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
ChainM
Resolution2.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide M N211 Q326 F616 G746 L747 N748 N175 Q290 F580 G710 L711 N712
BS02 KR0 M Y402 I457 Q459 Y366 I421 Q423
BS03 CA M D280 G281 I283 T285 D288 D244 G245 I247 T249 D252
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Cellular Component
GO:0009279 cell outer membrane

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5fq6, PDBe:5fq6, PDBj:5fq6
PDBsum5fq6
PubMed28077872
UniProtQ8A5H5

[Back to BioLiP]