Structure of PDB 5d4d Chain M

Receptor sequence
>5d4dM (length=1091) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRE
TFPIEGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARDEVFLGHIPL
MTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGP
WIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQG
LMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLG
EAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGH
EVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLTPAKLVNSRP
LEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDV
RDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGG
VVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPE
EVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAP
VVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRR
FYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIM
PFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIP
HLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSI
FGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYV
AQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVP
SRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFG
KRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDG
RTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQF
GGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVP
EPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASK
3D structure
PDB5d4d The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA.
ChainM
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna M R1031 M1035 R1004 M1008
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5d4d, PDBe:5d4d, PDBj:5d4d
PDBsum5d4d
PubMed27383794
UniProtQ8RQE9|RPOB_THET8 DNA-directed RNA polymerase subunit beta (Gene Name=rpoB)

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