Structure of PDB 4zto Chain M

Receptor sequence

>4ztoM (length=216) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GPVLTQTPPSASEPVGGTVTIKCQASQAIDEYLGWYQQKPGQRPKLLMYY
ASTLASGVPSRFKGSGSGTQFTLTISDLECADAATYYCQNYYVGSSTNYA
FTFGGGTEVVVKGDPVAPTVLIFPPAADQVATGTVTIVCVANKYFPDVTV
TWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKV
TQGTTSVVQSFNRGDC

3D structure

PDB

4zto Structural analysis of a novel rabbit monoclonal antibody R53 targeting an epitope in HIV-1 gp120 C4 region critical for receptor and co-receptor binding.

Chain

Resolution

2.3 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	M	D30 E31 Y32 Y92 V93 G94 S95	D30 E31 Y32 Y92 V93 G94 S95

External links

PDB	RCSB:4zto, PDBe:4zto, PDBj:4zto
PDBsum	4zto
PubMed	26251831

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