Structure of PDB 3d38 Chain M

Receptor sequence

>3d38M (length=323) Species: 1079 (Blastochloris viridis) [Search protein sequence]

ADYQTIYTQIQARGPHITVSGEWGDNDRVGKPFYSYWLGKIGDAQIGPIY
LGASGIAAFAFGSTAILIILFNMAAEVHFDPLQFFRQFFWLGLYPPKAQY
GMGIPPLHDGGWWLMAGLFMTLSLGSWWIRVYSRARALGLGTHIAWNFAA
AIFFVLCIGCIHPTLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYYCPWH
GFSIGFAYGCGLLFAAHGATILAVARFGGDREIEQITDRGTAVERAALFW
RWTIGFNATIESVHRWGWFFSLMVMVSASVGILLTGTFVDNWYLWCVKHG
AAPDYPAYLPATPDPASLPGAPK

3D structure

PDB

3d38 Simple host-guest chemistry to modulate the process of concentration and crystallization of membrane proteins by detergent capture in a microfluidic device.

Chain

Resolution

3.21 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	BCB	M	G201 I204 G205 Y208 G209	G201 I204 G205 Y208 G209
BS02	BPB	M	Y208 G211 L212	Y208 G211 L212
BS03	UQ1	M	F85 F89	F85 F89
BS04	FE2	M	H217 E232 H264	H217 E232 H264
BS05	MQ9	M	H217 A246 W250 I254 N257 A258 I260 V263 W266	H217 A246 W250 I254 N257 A258 I260 V263 W266
BS06	BCB	M	I177 H180 I181 L184	I177 H180 I181 L184
BS07	BCB	M	G62 M120 V155 L184 S188 F194 Y195 H200 S203 I204 Y208 M275 A278 I282	G62 M120 V155 L184 S188 F194 Y195 H200 S203 I204 Y208 M275 A278 I282
BS08	BPB	M	A58 F59 I66 S123 W127 F148 S271	A58 F59 I66 S123 W127 F148 S271
BS09	NS5	M	L70 L114 G117 G159 C160 V173 F175 G176 I177 H180	L70 L114 G117 G159 C160 V173 F175 G176 I177 H180

Gene Ontology

	Molecular Function
GO:0042314	bacteriochlorophyll binding
GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872	metal ion binding

	Biological Process
GO:0009772	photosynthetic electron transport in photosystem II
GO:0015979	photosynthesis
GO:0019684	photosynthesis, light reaction

	Cellular Component
GO:0016020	membrane
GO:0030077	plasma membrane light-harvesting complex
GO:0042717	plasma membrane-derived chromatophore membrane

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:3d38, PDBe:3d38, PDBj:3d38
PDBsum	3d38
PubMed	18831551
UniProt	P06010\|RCEM_BLAVI Reaction center protein M chain (Gene Name=pufM)

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