Structure of PDB 1w9b Chain M

Receptor sequence
>1w9bM (length=499) Species: 3728 (Sinapis alba) [Search protein sequence]
EITCQENLPFTCGNTDALNSSSFSSDFIFGVASSAYQIEGTIGRGLNIWD
GFTHRYPNKSGPDHGNGDTTCDSFSYWQKDIDVLDELNATGYRFSIAWSR
IIPRGKRSRGVNEKGIDYYHGLISGLIKKGITPFVTLFHWDLPQTLQDEY
EGFLDPQIIDDFKDYADLCFEEFGDSVKYWLTINQLYSVPTRGYGSALDA
PGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKI
GPTMITRWFLPYNDTDRHSIAATERMKEFFLGWFMGPLTNGTYPQIMIDT
VGERLPSFSPEESNLVKGSYDFLGLNYYFTQYAQPSPNPVNSTNHTAMMD
AGAKLTYINASGHYIGPLFEKDKADSTDNIYYYPKGIYSVMDYFKNKYYN
PLIYVTENGISTPGDENRNQSMLDYTRIDYLCSHLCFLNKVIKEKDVNVK
GYLAWALGDNYEFNKGFTVRFGLSYIDWNNVTDRDLKKSGQWYQSFISP
3D structure
PDB1w9b The glucosinolate-myrosinase system. New insights into enzyme-substrate interactions by use of simplified inhibitors.
ChainM
Resolution1.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.147: thioglucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CGT M Q187 S190 I257 R259 Y330 F331 E409 W457 E464 F465 Q185 S188 I255 R257 Y328 F329 E407 W455 E462 F463 MOAD: ic50=0.99mM
BS02 ZN M H56 D70 H54 D68
BS03 SO4 M K108 R111 K106 R109
BS04 SO4 M R259 Q333 R257 Q331
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008422 beta-glucosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0019137 thioglucosidase activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0009651 response to salt stress
GO:0019762 glucosinolate catabolic process
Cellular Component
GO:0005773 vacuole

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1w9b, PDBe:1w9b, PDBj:1w9b
PDBsum1w9b
PubMed15889170
UniProtP29736|MYRA_SINAL Myrosinase MA1

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