Structure of PDB 8yop Chain Ls

Receptor sequence
>8yopLs (length=196) Species: 9606 (Homo sapiens) [Search protein sequence]
DRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVL
MGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLA
NKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI
LSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYN
3D structure
PDB8yop Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline.
ChainLs
Resolution2.2 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Ls R6 W9 F14 K16 D33 N34 V35 S37 K38 Q41 R44 L54 M55 K57 N58 T59 M60 K63 G84 R112 R2 W5 F10 K12 D29 N30 V31 S33 K34 Q37 R40 L50 M51 K53 N54 T55 M56 K59 G80 R108
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005829 cytosol
GO:0005840 ribosome
GO:0005925 focal adhesion
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0022625 cytosolic large ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0036464 cytoplasmic ribonucleoprotein granule
GO:0070062 extracellular exosome
GO:0098794 postsynapse
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8yop, PDBe:8yop, PDBj:8yop
PDBsum8yop
PubMed38942792
UniProtP05388|RLA0_HUMAN Large ribosomal subunit protein uL10 (Gene Name=RPLP0)

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