Structure of PDB 8pvk Chain Lr

Receptor sequence
>8pvkLr (length=214) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
ITVAGVRQNVAELLDYSNNVKKRNFLETVELQIGLKNYDPQRDKRFSGTV
KLPTVPRPNMSICILGDQHDIDRAKHGGIDAMSADDLKKLNKNKKLIKKL
ARKYDAFIASESLIKQIPRLLGPGLSKAGKFPTPVSHSDDLSAKVNEVKS
TVKFQLKKVLCMGVAVGNVGMTQEQLVANIMLAINYLVSLLKKGWQNVGS
LTIKATMSPPKRLY
3D structure
PDB8pvk Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.
ChainLr
Resolution2.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Lr R26 N27 F28 T31 E33 Q35 G37 N40 M63 K98 K101 K102 R105 K130 K160 V162 C164 G166 S203 K207 T209 M210 R23 N24 F25 T28 E30 Q32 G34 N37 M60 K95 K98 K99 R102 K127 K157 V159 C161 G163 S200 K204 T206 M207
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000470 maturation of LSU-rRNA
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8pvk, PDBe:8pvk, PDBj:8pvk
PDBsum8pvk
PubMed37921038
UniProtG0S4Z9

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