Structure of PDB 8g5y Chain Lm

Receptor sequence
>8g5yLm (length=52) Species: 9606 (Homo sapiens) [Search protein sequence]
IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKK
VK
3D structure
PDB8g5y mRNA decoding in human is kinetically and structurally distinct from bacteria.
ChainLm
Resolution2.29 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna Lm K93 R97 Y100 R102 H104 R106 V108 N109 R111 K112 K113 K114 G116 H117 N119 R122 K124 K125 K17 R21 Y24 R26 H28 R30 V32 N33 R35 K36 K37 K38 G40 H41 N43 R46 K48 K49
BS02 ZN Lm C96 C99 C110 C115 C20 C23 C34 C39
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 30 14:09:00 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8g5y', asym_id = 'Lm', title = 'mRNA decoding in human is kinetically and structurally distinct from bacteria.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8g5y', asym_id='Lm', title='mRNA decoding in human is kinetically and structurally distinct from bacteria.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '8g5y', asym_id = 'Lm'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='8g5y', asym_id='Lm')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>