Structure of PDB 6zmo Chain Lm
Receptor sequence
>6zmoLm (length=52) Species:
9606
(Homo sapiens) [
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IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKK
VK
3D structure
PDB
6zmo
Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.
Chain
Lm
Resolution
3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number
?
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
rna
Lm
R97 Y100 R102 H104 N109 R111 K112 K114 G116 H117 R122 K124 K125
R21 Y24 R26 H28 N33 R35 K36 K38 G40 H41 R46 K48 K49
BS02
ZN
Lm
C96 C110
C20 C34
Gene Ontology
Molecular Function
GO:0003735
structural constituent of ribosome
GO:0005515
protein binding
GO:0031386
protein tag activity
GO:0031625
ubiquitin protein ligase binding
Biological Process
GO:0002181
cytoplasmic translation
GO:0006412
translation
GO:0016567
protein ubiquitination
GO:0019941
modification-dependent protein catabolic process
GO:0036211
protein modification process
Cellular Component
GO:0005615
extracellular space
GO:0005634
nucleus
GO:0005654
nucleoplasm
GO:0005737
cytoplasm
GO:0005741
mitochondrial outer membrane
GO:0005765
lysosomal membrane
GO:0005783
endoplasmic reticulum
GO:0005789
endoplasmic reticulum membrane
GO:0005829
cytosol
GO:0005840
ribosome
GO:0005886
plasma membrane
GO:0010008
endosome membrane
GO:0022625
cytosolic large ribosomal subunit
GO:0022626
cytosolic ribosome
GO:0022627
cytosolic small ribosomal subunit
GO:0030666
endocytic vesicle membrane
GO:0031982
vesicle
GO:0045202
synapse
GO:0070062
extracellular exosome
GO:1990904
ribonucleoprotein complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:6zmo
,
PDBe:6zmo
,
PDBj:6zmo
PDBsum
6zmo
PubMed
32680882
UniProt
P62987
|RL40_HUMAN Ubiquitin-ribosomal protein eL40 fusion protein (Gene Name=UBA52)
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