Structure of PDB 8y0w Chain Ll

Receptor sequence
>8y0wLl (length=50) Species: 9606 (Homo sapiens) [Search protein sequence]
SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL
3D structure
PDB8y0w dormant ribosome with eIF5A, eEF2 and SERBP1
ChainLl
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Ll S2 S3 H4 K5 K10 L13 R36 Y37 S39 R41 R42 W44 R45 K48 L49 S1 S2 H3 K4 K9 L12 R35 Y36 S38 R40 R41 W43 R44 K47 L48
BS02 rna Ll F7 R8 R11 K15 K18 Q19 R21 I23 P24 W26 M29 K30 T31 F6 R7 R10 K14 K17 Q18 R20 I22 P23 W25 M28 K29 T30
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0002181 cytoplasmic translation
GO:0002227 innate immune response in mucosa
GO:0006412 translation
GO:0019731 antibacterial humoral response
GO:0050830 defense response to Gram-positive bacterium
GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide
Cellular Component
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:0022626 cytosolic ribosome
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8y0w, PDBe:8y0w, PDBj:8y0w
PDBsum8y0w
PubMed38698775
UniProtP62891|RL39_HUMAN Large ribosomal subunit protein eL39 (Gene Name=RPL39)

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