Structure of PDB 8pvl Chain Lj

Receptor sequence

>8pvlLj (length=88) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]

TKGTSSFGKRHNKTHGLCRRCGRRSLHNQKKVCASCGYPAAKTRKYNWSE
KAKRRKVTGTGRMRYLSTVPRRFKNGFRTGVPKGARGP

3D structure

PDB

8pvl Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.

Chain

Resolution

2.19 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	Lj	T2 K3 G4 T5 S6 S7 F8 G9 K10 R11 H12 N13 K14 T15 H16 R24 R25 S26 H28 Q30 A35 A42 K43 T44 R45 K46 Y47 N48 W49 K52 R55 R56 T59	T1 K2 G3 T4 S5 S6 F7 G8 K9 R10 H11 N12 K13 T14 H15 R23 R24 S25 H27 Q29 A34 A41 K42 T43 R44 K45 Y46 N47 W48 K51 R54 R55 T58
BS02	rna	Lj	R20 R21 C22 G23 K32 A42 T59 G60 G62 R63 M64 R65 Y66 L67 R72 F74 K75 N76 F78 R79 T80 G81 V82 P83 A86 R87	R19 R20 C21 G22 K31 A41 T58 G59 G61 R62 M63 R64 Y65 L66 R71 F73 K74 N75 F77 R78 T79 G80 V81 P82 A85 R86
BS03	ZN	Lj	C19 C22 C34 C37	C18 C21 C33 C36

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding
GO:0046872	metal ion binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links