Structure of PDB 7zjw Chain Lj

Receptor sequence

>7zjwLj (length=114) Species: 9986 (Oryctolagus cuniculus)

VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPG
RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK
IVVKVLKAQAQSQK

3D structure

• PDB: 7zjw Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon.
• Chain: Lj
• Resolution: 2.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Lj	V2 R4 L5 T6 Y7 R8 R9 R10 L11 S12 Y13 N14 T15 S17 R21 R24 T25 P26 G27 Y32 L33 Y34 K36 K37 P42 K43 A45 V48 R54 G55 R60 P61 K62 M65 R66 S68 K69 T70 K72 H73 S75 R76 Y78 G79 G80 K85 R90 R93 A94 I97 E98 Q100	V1 R3 L4 T5 Y6 R7 R8 R9 L10 S11 Y12 N13 T14 S16 R20 R23 T24 P25 G26 Y31 L32 Y33 K35 K36 P41 K42 A44 V47 R53 G54 R59 P60 K61 M64 R65 S67 K68 T69 K71 H72 S74 R75 Y77 G78 G79 K84 R89 R92 A93 I96 E97 Q99
BS02	MG	Lj	G55 H73	G54 H72
BS03	ZN	Lj	C46 C49	C45 C48

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005783 endoplasmic reticulum
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7zjw, PDBe:7zjw, PDBj:7zjw
• PDBsum: 7zjw
• PubMed: 35709277
• UniProt: G1TXG5|RL34_RABIT Large ribosomal subunit protein eL34 (Gene Name=RPL34)