Structure of PDB 8bsi Chain Li

Receptor sequence
>8bsiLi (length=115) Species: 5741 (Giardia intestinalis) [Search protein sequence]
GLKAKDLVGLSQEDLQRKLADLKRELLSLRTMKATAIARFRVCKKDVARV
LTVINQKARDEARAAFEGAEHIPKTFRPRLTHAMRCQLTEKQKRLLPSKL
MKRKLQFPKLKYAVK
3D structure
PDB8bsi Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis.
ChainLi
Resolution3.4 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Li A34 K63 R77 K80 K81 R85 L87 T88 N91 R95 K110 R115 T117 H118 R121 A4 K33 R41 K44 K45 R49 L51 T52 N55 R59 K74 R79 T81 H82 R85
BS02 rna Li H107 R113 H118 S134 K135 L136 R139 H71 R77 H82 S98 K99 L100 R103
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8bsi, PDBe:8bsi, PDBj:8bsi
PDBsum8bsi
PubMed36912103
UniProtA0A644FBK5

[Back to BioLiP]