Structure of PDB 6zmo Chain Lg

Receptor sequence

>6zmoLg (length=114) Species: 9606 (Homo sapiens) [Search protein sequence]

VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPG
RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK
IVVKVLKAQAQSQK

3D structure

PDB

6zmo Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.

Chain

Resolution

3.1 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	Lg	V2 R4 L5 Y7 R8 R9 R10 L11 S12 Y13 N14 T15 S17 R24 T25 P26 G27 N28 R29 K37 K40 P42 K43 V48 P50 R52 R54 G55 P61 K62 L64 M65 R66 S68 K69 T70 K72 H73 S75 R76 Y78 G80 S81 R90 R93 A94 I97 Q100 K115	V1 R3 L4 Y6 R7 R8 R9 L10 S11 Y12 N13 T14 S16 R23 T24 P25 G26 N27 R28 K36 K39 P41 K42 V47 P49 R51 R53 G54 P60 K61 L63 M64 R65 S67 K68 T69 K71 H72 S74 R75 Y77 G79 S80 R89 R92 A93 I96 Q99 K114
BS02	MG	Lg	G55 T70 H73	G54 T69 H72
BS03	ZN	Lg	C49 C86	C48 C85

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0045296	cadherin binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:0045202	synapse
GO:0070062	extracellular exosome
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:6zmo, PDBe:6zmo, PDBj:6zmo
PDBsum	6zmo
PubMed	32680882
UniProt	P49207\|RL34_HUMAN Large ribosomal subunit protein eL34 (Gene Name=RPL34)