Structure of PDB 6y0g Chain Lg

Receptor sequence

>6y0gLg (length=114) Species: 9606 (Homo sapiens) [Search protein sequence]

VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPG
RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK
IVVKVLKAQAQSQK

3D structure

PDB

6y0g Dynamics of uS19 C-Terminal Tail during the Translation Elongation Cycle in Human Ribosomes.

Chain

Resolution

3.2 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Lg	V2 R4 L5 T6 Y7 R8 R9 R10 S12 Y13 T15 K19 R21 L22 R24 T25 P26 N28 R29 I30 Y32 Y34 K36 K37 P42 A45 V48 R52 R54 G55 R57 A58 P61 K62 L64 M65 R66 S68 K69 T70 K72 H73 V74 S75 R76 Y78 G79 G80 R93 A94 I97 E98 Q100 K101 K115	V1 R3 L4 T5 Y6 R7 R8 R9 S11 Y12 T14 K18 R20 L21 R23 T24 P25 N27 R28 I29 Y31 Y33 K35 K36 P41 A44 V47 R51 R53 G54 R56 A57 P60 K61 L63 M64 R65 S67 K68 T69 K71 H72 V73 S74 R75 Y77 G78 G79 R92 A93 I96 E97 Q99 K100 K114
BS02	ZN	Lg	C46 C49 C86	C45 C48 C85

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0045296	cadherin binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:0045202	synapse
GO:0070062	extracellular exosome
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:6y0g, PDBe:6y0g, PDBj:6y0g
PDBsum	6y0g
PubMed	32268098
UniProt	P49207\|RL34_HUMAN Large ribosomal subunit protein eL34 (Gene Name=RPL34)