Structure of PDB 8p5d Chain LY0

Receptor sequence
>8p5dLY0 (length=131) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
MKFNKNVTASRRKNRKAHFTSIGLERTKLMNAPLSKDLKEEYGIKRIAVR
PGDMVKVVSGEFKKKEGVVMKVNRHDIKIEVEGCFVQKEDGKKINKGIHP
SNLRIIKLSMEKDRAEIINKKVEAMKSEVKA
3D structure
PDB8p5d Spraguea lophii ribosome
ChainLY0
Resolution10.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna LY0 M1 K2 F3 N4 T8 A9 R11 R12 K13 N14 R15 H18 F19 T27 P33 K45 R46 P51 G60 E61 H75 H99 S101 N102 K112 D113 K120 E128 M1 K2 F3 N4 T8 A9 R11 R12 K13 N14 R15 H18 F19 T27 P33 K45 R46 P51 G60 E61 H75 H99 S101 N102 K112 D113 K120 E128
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
PDBsum8p5d
PubMed37709902
UniProtS7W884

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