Structure of PDB 7cpv Chain LX

Receptor sequence

>7cpvLX (length=118) Species: 10090 (Mus musculus) [Search protein sequence]

KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMK
KIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYV
RLAPDYDALDVANKIGII

3D structure

PDB

7cpv A male germ-cell-specific ribosome controls male fertility.

Chain

Resolution

3.03 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	LX	P44 T45 F46 R47 R48 P49 K50 T51 R53 R56 Q57 P58 K59 Y60 R62 T83 K89 N105 K106 H107 K123 N125 T126 L127 P130 K134 K135 Y137 R139	P6 T7 F8 R9 R10 P11 K12 T13 R15 R18 Q19 P20 K21 Y22 R24 T45 K51 N67 K68 H69 K85 N87 T88 L89 P92 K96 K97 Y99 R101
BS02	rna	LX	P49 T51 L52 R55 R56 P66 R67 R68 K70 H107 Q108	P11 T13 L14 R17 R18 P28 R29 R30 K32 H69 Q70

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding
GO:1904841	TORC2 complex binding

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:0045202	synapse
GO:0098793	presynapse
GO:0098794	postsynapse
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:7cpv, PDBe:7cpv, PDBj:7cpv
PDBsum	7cpv
PubMed	36517592
UniProt	P62751\|RL23A_MOUSE Large ribosomal subunit protein uL23 (Gene Name=Rpl23a)