Structure of PDB 8p5d Chain LV0

Receptor sequence
>8p5dLV0 (length=141) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
PGKGKQPLDAIKNRYGFTRGIQVGTVLACADNSGAKMLKTIGVKGVSGRL
NRLPAAGPGDVIVASVVKGRSDMRKKIVLAVIIRQKQMIRRKDGVRLQFE
ESAAVIISNKGDLKGTQISGPVLREVCDIWPKISSQAGSIY
3D structure
PDB8p5d Spraguea lophii ribosome
ChainLV0
Resolution10.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna LV0 P2 K4 Q7 R15 G21 T26 I42 V44 G46 V47 S48 R50 L51 N52 R53 L54 K76 Q88 R91 R97 P1 K3 Q6 R14 G20 T25 I41 V43 G45 V46 S47 R49 L50 N51 R52 L53 K75 Q87 R90 R96
BS02 rna LV0 S72 R75 S71 R74
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
PDBsum8p5d
PubMed37709902
UniProtS7XLC4

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