Structure of PDB 7zjw Chain LV

Receptor sequence

>7zjwLV (length=176) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

MKASGTLREYKVVGRCLPTPKSPAPPLYRMRIFAPNHVVAKSRFWYFVSQ
LKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDL
TTAGAVTQCYRDMGARHRARAHSIQVMKVEEMAAARCRRPAVKQFHDSRI
RFPLPHRVLRRQHKPRFSAKRPNTFF

3D structure

PDB

7zjw Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon.

Chain

Resolution

2.8 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	LV	K2 A3 S4 G5 Y63 Q66 V67 F68 K70 P72 R87 S88 H91 M93 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 R139 H146 D147 S148 P155 H156 R157 R160 R161 H163 P165 R166 A169 K170 R171 P172 T174 F175 F176	K2 A3 S4 G5 Y63 Q66 V67 F68 K70 P72 R87 S88 H91 M93 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 R139 H146 D147 S148 P155 H156 R157 R160 R161 H163 P165 R166 A169 K170 R171 P172 T174 F175 F176
BS02	rna	LV	R43 Y46 S49 Q50 K53 K55 S57 D85 R87 H122	R43 Y46 S49 Q50 K53 K55 S57 D85 R87 H122

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:7zjw, PDBe:7zjw, PDBj:7zjw
PDBsum	7zjw
PubMed	35709277
UniProt	A0A1Z5LHJ5

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