Structure of PDB 8bjq Chain LT

Receptor sequence

>8bjqLT (length=159) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

GKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKG
MPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKC
RQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTL
APVPYETFI

3D structure

PDB

8bjq The dynamic architecture of Map1- and NatB-ribosome complexes coordinates the sequential modifications of nascent polypeptide chains.

Chain

Resolution

3.8 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	LT	H26 S28	H25 S27
BS02	rna	LT	G2 K3 S4 H5 G6 Y7 R8 S9 R10 R12 Y13 M14 Q16 F19 H22 G23 D41 S47 Q49 K50 G51 H54 K55 Y57 G59 T61 T68 K69 S70 S71 K78 V80 R83 K87 R88 N90 R92 K100 R102 R108 K110 N112 R116 Q127 K129 R130	G1 K2 S3 H4 G5 Y6 R7 S8 R9 R11 Y12 M13 Q15 F18 H21 G22 D40 S46 Q48 K49 G50 H53 K54 Y56 G58 T60 T67 K68 S69 S70 K77 V79 R82 K86 R87 N89 R91 K99 R101 R107 K109 N111 R115 Q126 K128 R129

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:8bjq, PDBe:8bjq, PDBj:8bjq
PDBsum	8bjq
PubMed	37079644
UniProt	Q02753\|RL21A_YEAST Large ribosomal subunit protein eL21A (Gene Name=RPL21A)

[Back to BioLiP]