Structure of PDB 5wlc Chain LT

Receptor sequence
>5wlcLT (length=850) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence]
KNSKIFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHL
LFVSEKETPSSIVALSAHFHYVYAAYENKVGIYKRGIEEHLLELETDANV
EHLCIFGDYLCASTDDNSIFIYKKSDPQDKYPSEFYTKLTVTEIQGGEIV
SLQHLATYLNKLTVVTKSNVLLFNVRTGKLVFTSNEFPDQITTAEPAPVL
DIIALGTVTGEVIMFNMRKGKRIRTIKIPQSRISSLSFRTDGSSHLSVGT
SSGDLIFYDLDRRSRIHVLKNIHRESYGGVTQATFLNGQPIIVTSGGDNS
LKEYVFDPSLSQGSGDVVVQPPRYLRSRGGHSQPPSYIAFADSQSHFMLS
ASKDRSLWSFSLRKDAQSQEMSQRLHKKQDGGRVGGSTIKSKFPEIVALA
IENARIGEWENIITAHKDEKFARTWDMRNKRVGRWTFDTTDDGFVKSVAM
SQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMV
SCGLDGIVGFYDFNKSTLLGKLKLDAPITAMVYHRSSDLFALALDDLSIV
VIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGG
CIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQFKTVSTRTI
DESEFLNDIDFNTYTSLEQIDKELLTLSIGPRSKMNTLLHLDVIRKRSKP
KEAPKKSEKLPFFLQLSGEKRLGFESHFTKQLREGSQSKDYSSLLATLIN
FSPAAVDLEIRSLNSFEPFDEIVWFIDALTQGLKSNKNFELYETFMSLLF
KAHGDVIHANNKNQDIASALQNWEDVHKKEDRLDDLVKFCMGVAAFVTTA
3D structure
PDB5wlc The complete structure of the small-subunit processome.
ChainLT
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna LT L44 G45 L68 L69 F70 F87 H88 R103 Q146 R344 H364 R381 D383 Q385 Q387 K395 G400 R401 G403 S405 T406 L26 G27 L50 L51 F52 F69 H70 R85 Q128 R326 H346 R363 D365 Q367 Q369 K377 G382 R383 G385 S387 T388
BS02 rna LT S390 R392 N447 S372 R374 N429
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5wlc, PDBe:5wlc, PDBj:5wlc
PDBsum5wlc
PubMed28945246
UniProtQ06078|UTP21_YEAST U3 small nucleolar RNA-associated protein 21 (Gene Name=UTP21)

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