Structure of PDB 8pv5 Chain LS

Receptor sequence

>8pv5LS (length=174) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]

MGRLQEYQVIGRHLPTEANPNPALYRMRIFAPNEVVAKSRFWYFLRGLKK
VKKATGEIVSVNVISEKHPLKVKNFGIWLRYDSRSGTHNMYKEYRETSRV
AAVEAMYADMAARHRARFRSIHILKVVELEKTEDVKRPYIKQLVAKNLSF
PLPHRVPKISTKKIFSAKRPSTFS

3D structure

PDB

8pv5 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.

Chain

Resolution

2.86 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	LS	M1 G2 N62 S65 E66 K67 H68 K71 R84 S85 H88 N89 Y91 A111 A112 R113 H114 R115 R117 T132 R137 Y139 V144 A145 K146 P153 H154 T161 A167 K168 T172 F173 S174	M1 G2 N62 S65 E66 K67 H68 K71 R84 S85 H88 N89 Y91 A111 A112 R113 H114 R115 R117 T132 R137 Y139 V144 A145 K146 P153 H154 T161 A167 K168 T172 F173 S174

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8pv5, PDBe:8pv5, PDBj:8pv5
PDBsum	8pv5
PubMed	37921038
UniProt	G0SCE2

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