Structure of PDB 8pvk Chain LM

Receptor sequence
>8pvkLM (length=141) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
AEINVEATSWRRVEVGRVLKLENGSLAAIVEIIDHKRVLADGPSSDPKLA
TPRGIVPLSRALLTPIVIPKLPRGARTGAVKKAWEAYGVDAKWKETNWAK
KQLQQERRQSLTDFDRFKVMRLKKQRRFEERKALAKIKAAA
3D structure
PDB8pvk Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.
ChainLM
Resolution2.55 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna LM T9 W11 K37 L63 P73 R74 G75 R77 K83 N98 W99 R109 M121 R122 K125 Q126 R128 F129 R132 T8 W10 K36 L62 P72 R73 G74 R76 K82 N97 W98 R108 M120 R121 K124 Q125 R127 F128 R131
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8pvk, PDBe:8pvk, PDBj:8pvk
PDBsum8pvk
PubMed37921038
UniProtG0S1R0

[Back to BioLiP]