Structure of PDB 6yxm Chain LLL

Receptor sequence

>6yxmLLL (length=212) Species: 9606 (Homo sapiens) [Search protein sequence]

NLTLIQSRSVSGSPGQTVSISCTANGAHIGDSYVQWFQQRPGSAPRSVIF
EDDKRPSGVPDRLSGSTDFSSNSASLTISGLESEDEADYYCQSYYRGDWV
LGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTV
DWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVT
HEGHTVEKSLSR

3D structure

PDB

6yxm Surface Ig variable domain glycosylation affects autoantigen binding and acts as threshold for human autoreactive B cell activation.

Chain

LLL

Resolution

2.85 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	LLL	G30 D31 S32 Y33 Y94 R96 G97 W99	G30 D31 S32 Y33 Y94 R96 G97 W99

External links

PDB	RCSB:6yxm, PDBe:6yxm, PDBj:6yxm
PDBsum	6yxm
PubMed	35138894

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