Structure of PDB 7zjx Chain LL

Receptor sequence

>7zjxLL (length=213) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH
MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINK
MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVVEA
LRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIP
NRGPLDKWRALHS

3D structure

PDB

7zjx Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon.

Chain

Resolution

3.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	LL	R4 A6 R7 C8 K13 N14 K15 P16 Y17 F22 R24 D35 K39 K40 S61 E63 A64 E66 R88 R90 H92 F94 R98 N100 R110 Q112 M115 R116 A118 F119 G120 Q133 R154 F157 K158 P160 R162 D193 G194 K198	R3 A5 R6 C7 K12 N13 K14 P15 Y16 F21 R23 D34 K38 K39 S60 E62 A63 E65 R87 R89 H91 F93 R97 N99 R109 Q111 M114 R115 A117 F118 G119 Q132 R153 F156 K157 P159 R161 D192 G193 K197
BS02	rna	LL	R10 Y11 E56 Y57 I131 Y199 N202 R203 G204 P205 L206 W209	R9 Y10 E55 Y56 I130 Y198 N201 R202 G203 P204 L205 W208

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0006412	translation
GO:0006417	regulation of translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Cellular Component

External links

PDB	RCSB:7zjx, PDBe:7zjx, PDBj:7zjx
PDBsum	7zjx
PubMed	35709277
UniProt	B7NZQ2\|RL10_RABIT Large ribosomal subunit protein uL16 (Gene Name=RPL10)

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