Structure of PDB 8p5d Chain LH0

Receptor sequence
>8p5dLH0 (length=183) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
VYVYVEEKVQIPEGCKVEVVNKKVTVTGPKGTVSKDFSHIFVFIDIHEEN
VRCRLWNCRKQERSKLITCSKLIKNMIDGSMSGYFYELKAAYKHFPITFE
IKENGKLLIVKNFLGQKWAREFKMIGDTIIKQGVTKDHLILEGISKEDVS
QTAGLIQNNCLPKNLDRRIFQDGVYIATKGLIE
3D structure
PDB8p5d Spraguea lophii ribosome
ChainLH0
Resolution10.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna LH0 H40 S65 K66 I68 T69 K72 K94 K118 W119 K147 S151 Q152 N159 D167 R169 I170 F171 H39 S64 K65 I67 T68 K71 K93 K117 W118 K146 S150 Q151 N158 D166 R168 I169 F170
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
PDBsum8p5d
PubMed37709902
UniProtS7XRZ9

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