Structure of PDB 8p5d Chain LF0

Receptor sequence

>8p5dLF0 (length=231) Species: 1358809 (Spraguea lophii 42_110)

DLIAKKEQYNLRMEELQKKQQEQHLKRVEENKKYAEKRTVELLETYKKIA
LEQQLSEERMQKENKIYAPKDPHFYAVVLIKSPLRASNKIKKTLELFRLK
HINNCVLVKNNESSRQMLQKIRNFVAYGELKLKTLRELIYKRGSCHIFSE
KLNITNETLEDAFKNIRCIEEFIYELYFNDERFKELNNFLNPFKLTPPKG
GYKGRKAKDIIEGGAVGNHQDKIGELIKKMI

3D structure

• PDB: 8p5d Spraguea lophii ribosome
• Chain: LF0
• Resolution: 10.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	LF0	S86 L88 R89 S91 N92 K93 L100 K113 N115 E116 S117 Q120 K124 K188 K198 L199 P201 K203 G204 G205 Y206 K207 R209 K210	S82 L84 R85 S87 N88 K89 L96 K109 N111 E112 S113 Q116 K120 K184 K194 L195 P197 K199 G200 G201 Y202 K203 R205 K206
BS02	rna	LF0	Q123 R126 N127 R209 E216	Q119 R122 N123 R205 E212

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit

External links

• PDB: RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
• PDBsum: 8p5d
• PubMed: 37709902
• UniProt: S7W946