Structure of PDB 8p5d Chain LDD

Receptor sequence
>8p5dLDD (length=109) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
AFKDDKAIELTIPMGKITIDVSKRWKCRIGIRRLKKFITKTFHDKEAEVQ
ISPDLNKFLWERGMRNVPKRVRVRVNQEPYPKDPSKKVYKLSHVVVSTFK
GLGTEAIAE
3D structure
PDB8p5d Spraguea lophii ribosome
ChainLDD
Resolution10.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna LDD T12 K17 D21 S23 R25 R33 K41 K46 Q51 I52 N57 K58 W61 R63 M65 R66 K70 R71 G102 L103 G104 T105 T11 K16 D20 S22 R24 R32 K40 K45 Q50 I51 N56 K57 W60 R62 M64 R65 K69 R70 G101 L102 G103 T104
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
PDBsum8p5d
PubMed37709902
UniProtS7XW48

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