Structure of PDB 3j6x Chain L9

Receptor sequence

>3j6xL9 (length=191) Species: 580240 (Saccharomyces cerevisiae W303) [Search protein sequence]

MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNN
QLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPIN
VNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNS
VEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFITEDL

3D structure

PDB

3j6x Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.

Chain

Resolution

6.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L9	I20 K21 R23 K26 K39 H40 D42 V43 T44 V57 R62 K63 A66 R69 T70 S73 H96 F97 K121 K122 Q156 Q163 R166 R168 K170 D171 I172 R173 K174 F175	I20 K21 R23 K26 K39 H40 D42 V43 T44 V57 R62 K63 A66 R69 T70 S73 H96 F97 K121 K122 Q156 Q163 R166 R168 K170 D171 I172 R173 K174 F175

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:3j6x, PDBe:3j6x, PDBj:3j6x
PDBsum	3j6x
PubMed	24927574
UniProt	P05738\|RL9A_YEAST Large ribosomal subunit protein uL6A (Gene Name=RPL9A)

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