Structure of PDB 3j9z Chain L7

Receptor sequence

>3j9zL7 (length=178) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFRK

3D structure

PDB

3j9z Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G.

Chain

Resolution

3.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	L7	K71 V73 K77 R79	K71 V73 K77 R79
BS02	rna	L7	K32 T34 N36 M37 G40 T67 A69 R70 V73 A74 G75 I78 I84 K87 R114 K119 S120 F121 D122 N126 S128 G130 R132 G150 T154	K32 T34 N36 M37 G40 T67 A69 R70 V73 A74 G75 I78 I84 K87 R114 K119 S120 F121 D122 N126 S128 G130 R132 G150 T154
BS03	rna	L7	S23 M25 Q26 R29 Q62 K63 L65 V88 T89 R91	S23 M25 Q26 R29 Q62 K63 L65 V88 T89 R91

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:3j9z, PDBe:3j9z, PDBj:3j9z
PDBsum	3j9z
PubMed	26229983
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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