Structure of PDB 8vs9 Chain L35

Receptor sequence

>8vs9L35 (length=64) Species: 562 (Escherichia coli) [Search protein sequence]

PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVS
KGDLGLVIACLPYA

3D structure

PDB

8vs9 Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.

Chain

L35

Resolution

3.9 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L35	P1 K2 I3 K4 T5 R7 K11 R12 T16 G17 K18 K22 H25 A26 N27 R29 H30 I31 L32 T33 K34 T37 K38 R39 K40 R41 H42 L43 R44 S50 K51 G52 D53 L56 Y63	P1 K2 I3 K4 T5 R7 K11 R12 T16 G17 K18 K22 H25 A26 N27 R29 H30 I31 L32 T33 K34 T37 K38 R39 K40 R41 H42 L43 R44 S50 K51 G52 D53 L56 Y63

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:8vs9, PDBe:8vs9, PDBj:8vs9
PDBsum	8vs9
PubMed	38500588
UniProt	P0A7Q1\|RL35_ECOLI Large ribosomal subunit protein bL35 (Gene Name=rpmI)