Structure of PDB 8vs9 Chain L32

Receptor sequence

>8vs9L32 (length=56) Species: 562 (Escherichia coli)

AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRG
RKVIAK

3D structure

• PDB: 8vs9 Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.
• Chain: L32
• Resolution: 3.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L32	A1 V2 Q3 Q4 N5 K6 T8 R9 S10 R12 M14 R15 R16 H18 S28 V29 K31 R39 H40 Y48 R49	A1 V2 Q3 Q4 N5 K6 T8 R9 S10 R12 M14 R15 R16 H18 S28 V29 K31 R39 H40 Y48 R49

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Dec 2 07:41:08 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8vs9', asym_id = 'L32', title = 'Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8vs9', asym_id='L32', title='Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0006412,0015934', uniprot = '', pdbid = '8vs9', asym_id = 'L32'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0006412,0015934', uniprot='', pdbid='8vs9', asym_id='L32')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>