Structure of PDB 8vs9 Chain L27

Receptor sequence

>8vs9L27 (length=75) Species: 562 (Escherichia coli) [Search protein sequence]

RNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLF
AKADGKVKFEVKGPKNRKFISIEAE

3D structure

PDB

8vs9 Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.

Chain

L27

Resolution

3.9 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L27	R7 N8 R10 D11 S12 E13 A14 K15 R16 L17 K20 F22 G23 E25 A29 G30 S31 I32 R37 G38 T39 K40 F41 G50 R51 D52 H53 T54 F56 F65 R73	R1 N2 R4 D5 S6 E7 A8 K9 R10 L11 K14 F16 G17 E19 A23 G24 S25 I26 R31 G32 T33 K34 F35 G44 R45 D46 H47 T48 F50 F59 R67
BS02	rna	L27	K68 G69 P70 N72	K62 G63 P64 N66

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding
GO:0043022	ribosome binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0001558	regulation of cell growth
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0042256	cytosolic ribosome assembly
GO:0090070	positive regulation of ribosome biogenesis
GO:1902626	assembly of large subunit precursor of preribosome

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:8vs9, PDBe:8vs9, PDBj:8vs9
PDBsum	8vs9
PubMed	38500588
UniProt	P0A7L8\|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)