Structure of PDB 8vs9 Chain L05

Receptor sequence

>8vs9L05 (length=177) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR

3D structure

PDB

8vs9 Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.

Chain

L05

Resolution

3.9 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	L05	T34 N36 M37 G38 V39 G40 E41 R70 V73 F76 I84 K87 S120 F121 D122 R124 S128 M129 G130 V131 R132 G150 L151 D152 T154 T156	T34 N36 M37 G38 V39 G40 E41 R70 V73 F76 I84 K87 S120 F121 D122 R124 S128 M129 G130 V131 R132 G150 L151 D152 T154 T156
BS02	rna	L05	S23 V24 M25 T89 R91	S23 V24 M25 T89 R91
BS03	rna	L05	S72 A74 K77 R132	S72 A74 K77 R132

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:8vs9, PDBe:8vs9, PDBj:8vs9
PDBsum	8vs9
PubMed	38500588
UniProt	A0A140N5A3

[Back to BioLiP]