Structure of PDB 8rjd Chain L

Receptor sequence

>8rjdL (length=210) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

APSRNGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQARARRIAPRPA
AGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPR
RRNKSTESLQANVQRLKEYRSKLVLFPRKPSAPKKGDSSAEELKLATQLT
GPVMPIRNVFKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKE
AAEQDVEKKK

3D structure

PDB

8rjd UCSF ChimeraX: Meeting modern challenges in visualization and analysis.

Chain

Resolution

2.78574 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L	A2 R5 M8 L10 K11 P12 H13 F14 H15 K16 W18 Q19 W25 Q28 P29 R31 K32 R35 R36 R39 R42 R56 R60 P62 T63 V64 R65 Y66 H67 R71 G73 R74 L78 K88 R92 D99 P100 R101 R102 R103 S106 Q115 R129 R158 K162 K163 K165 F179 R183 M184 R186 A187 L191 G193 I194 R195 K197 R198	A1 R4 M7 L9 K10 P11 H12 F13 H14 K15 W17 Q18 W24 Q27 P28 R30 K31 R34 R35 R38 R41 R55 R59 P61 T62 V63 R64 Y65 H66 R70 G72 R73 L77 K87 R91 D98 P99 R100 R101 R102 S105 Q114 R128 R157 K161 K162 K164 F178 R182 M183 R185 A186 L190 G192 I193 R194 K196 R197
BS02	rna	L	F26 A30 R34	F25 A29 R33

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8rjd, PDBe:8rjd, PDBj:8rjd
PDBsum	8rjd
PubMed	38896445
UniProt	G1TPV0

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