Structure of PDB 8pj1 Chain L

Receptor sequence

>8pj1L (length=220) Species: 9606 (Homo sapiens) [Search protein sequence]

DKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEV
LKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAII
LAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVS
APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLW
KETVFTKSPYQEFTDHLVKT

3D structure

PDB

8pj1 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining

Chain

Resolution

3.4 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L	V112 Q113 K114 Q115 R117 R123 K125 K145 K183 T185 R187 C188 G189 S190 L192 R194 V205 S206 A207 Y223 R227 C229 T230 A231 T232 N235	V56 Q57 K58 Q59 R61 R67 K69 K89 K127 T129 R131 C132 G133 S134 L136 R138 V149 S150 A151 Y167 R171 C173 T174 A175 T176 N179

External links

PDB	RCSB:8pj1, PDBe:8pj1, PDBj:8pj1
PDBsum	8pj1
PubMed
UniProt	P15880\|RS2_HUMAN Small ribosomal subunit protein uS5 (Gene Name=RPS2)

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