Structure of PDB 6yam Chain L

Receptor sequence

>6yamL (length=182) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKA
ARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFL
ERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKH
IDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAG

3D structure

PDB

6yam Structural Insights into the Mammalian Late-Stage Initiation Complexes.

Chain

Resolution

3.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L	W7 C9 R10 T15 R17 R18 F20 R38 N39 K40 R41 R45 F72 R79 R80 K121 H125 R127 Q132 H134 I144 S146 F147 R150 P164 R169 G171 R172 V173 K174	W1 C3 R4 T9 R11 R12 F14 R32 N33 K34 R35 R39 F66 R73 R74 K115 H119 R121 Q126 H128 I138 S140 F141 R144 P158 R163 G165 R166 V167 K168

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation
GO:0042274	ribosomal small subunit biogenesis

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:0043226	organelle
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6yam, PDBe:6yam, PDBj:6yam
PDBsum	6yam
PubMed
UniProt	B7NZS8\|RS9_RABIT Small ribosomal subunit protein uS4 (Gene Name=RPS9)

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