Structure of PDB 6r7q Chain L

Receptor sequence

>6r7qL (length=210) Species: 9986 (Oryctolagus cuniculus)

APSRNGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQARARRIAPRPA
AGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPR
RRNKSTESLQANVQRLKEYRSKLVLFPRKPSAPKKGDSSAEELKLATQLT
GPVMPIRNVFKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKE
AAEQDVEKKK

3D structure

• PDB: 6r7q Structural and mutational analysis of the ribosome-arresting human XBP1u.
• Chain: L
• Resolution: 3.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L	A2 P3 R5 M8 L10 K11 H13 F14 H15 K16 W18 R20 W25 Q28 P29 K32 R35 R36 R39 R42 R56 V59 R60 C61 P62 T63 R65 Y66 H67 R71 R74 L78 R82 K88 R92 D99 P100 R101 R102 R103 S106 Q115 R129 R158 E164 K165 F179 R183 M184 A187 N188 L191 G193 I194 R195 K197 R198	A1 P2 R4 M7 L9 K10 H12 F13 H14 K15 W17 R19 W24 Q27 P28 K31 R34 R35 R38 R41 R55 V58 R59 C60 P61 T62 R64 Y65 H66 R70 R73 L77 R81 K87 R91 D98 P99 R100 R101 R102 S105 Q114 R128 R157 E163 K164 F178 R182 M183 A186 N187 L190 G192 I193 R194 K196 R197
BS02	rna	L	F26 A30 R34	F25 A29 R33

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 20:56:23 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6r7q', asym_id = 'L', title = 'Structural and mutational analysis of the ribosome-arresting human XBP1u.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6r7q', asym_id='L', title='Structural and mutational analysis of the ribosome-arresting human XBP1u.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6r7q', asym_id = 'L'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6r7q', asym_id='L')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>