Structure of PDB 6psu Chain L

Receptor sequence
>6psuL (length=529) Species: 562 (Escherichia coli) [Search protein sequence]
SQLKLLVTRGKEQGYLTYAEVNDHLDQIEDIIQMINDMGIQVMEEDAAEA
AAQVLSSVTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVA
EYPEAITYLLEQYDRVEAEEARLSDLITGFVDIDPELAREKFAELRAQYV
VTRDTIKHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQE
RLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS
EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANL
RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELA
ERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS
ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR
ERIRQIEAKALRKLRHPSRSEVLRSFLDD
3D structure
PDB6psu Stepwise Promoter Melting by Bacterial RNA Polymerase.
ChainL
Resolution3.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
GO:0005515 protein binding
GO:0016987 sigma factor activity
Biological Process
GO:0006351 DNA-templated transcription
GO:0006352 DNA-templated transcription initiation
GO:0006355 regulation of DNA-templated transcription
GO:0009408 response to heat
GO:0010468 regulation of gene expression
GO:0045892 negative regulation of DNA-templated transcription
GO:2000142 regulation of DNA-templated transcription initiation
Cellular Component
GO:0000345 cytosolic DNA-directed RNA polymerase complex
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:1903865 sigma factor antagonist complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6psu, PDBe:6psu, PDBj:6psu
PDBsum6psu
PubMed32160514
UniProtP00579|RPOD_ECOLI RNA polymerase sigma factor RpoD (Gene Name=rpoD)

[Back to BioLiP]