Structure of PDB 6db5 Chain L

Receptor sequence

>6db5L (length=211) Species: 9606 (Homo sapiens) [Search protein sequence]

SYELTQPPSVSVSPGQTARITCSGDELPKKYAYWYQEKSGQAPVLIIYED
SKRPSGIPERFSGSSSGTMATLTISGAQVEDEADYYCFSTDSSGDLWVFG
GGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAW
KADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE
GSTVEKTVAPT

3D structure

PDB

6db5 Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection.

Chain

Resolution

2.599 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	L	L28 P29 K30 K31 Y32 D51 S66 D95A	L27 P28 K29 K30 Y31 D50 S65 D95

External links

PDB	RCSB:6db5, PDBe:6db5, PDBj:6db5
PDBsum	6db5
PubMed	29997214

[Back to BioLiP]