Structure of PDB 5v6m Chain L

Receptor sequence

>5v6mL (length=219) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

AQVLTQTPSSVSAAVGGTVTIKCQSSQSVYPNNNLGWYQQKPGQPPKLLI
YEASTLASGVPSRFKGSGSGTQFTLTISDLECDDAATYYCLGAYDFTVAE
GAAFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREA
KVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYAC
EVTHQGLSSPVTKSFNRGE

3D structure

PDB

5v6m Increased epitope complexity correlated with antibody affinity maturation and a novel binding mode revealed by structures of rabbit antibodies against the third variable loop (V3) of HIV-1 gp120.

Chain

Resolution

1.9 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	L	Y28 N32 Y49 E50 L89 A91 Y92 D93 F94 T95	Y30 N34 Y51 E52 L91 A93 Y94 D95 F96 T97
BS02	CA	L	A97 F98	A103 F104

External links

PDB	RCSB:5v6m, PDBe:5v6m, PDBj:5v6m
PDBsum	5v6m
PubMed	29343576

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