Structure of PDB 5m0r Chain L

Receptor sequence
>5m0rL (length=216) Species: 36374 (Visna/maedi virus EV1 KV1772) [Search protein sequence]
IDHWQVDYTHYEDKIILVWVETNSGLIYAERVKGETGQEFRVQTMKWYAM
FAPKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQT
LKNTLEKLIPMFNAFESALAGTLITLNIKRKGGLGTSPMDIFIFNKEQQR
IQQQSKSKQEKIRFCYYRTRKRGHPGEWQGPTQVLWGGDGAIVVKDRGTD
RYLVIANKDVKFIPPP
3D structure
PDB5m0r A supramolecular assembly mediates lentiviral DNA integration.
ChainL
Resolution8.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.49: RNA-directed DNA polymerase.
2.7.7.7: DNA-directed DNA polymerase.
3.1.-.-
3.1.13.2: exoribonuclease H.
3.1.26.4: ribonuclease H.
3.4.23.-
3.6.1.23: dUTP diphosphatase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna L R227 K267 K270 R168 K208 K211
BS02 dna L R231 G232 R172 G173
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Biological Process
GO:0015074 DNA integration

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Molecular Function
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Biological Process
External links
PDB RCSB:5m0r, PDBe:5m0r, PDBj:5m0r
PDBsum5m0r
PubMed28059770
UniProtP35956|POL_VILVK Gag-Pol polyprotein (Gene Name=pol)

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