Structure of PDB 5gip Chain L

Receptor sequence

>5gipL (length=375) Species: 2287 (Saccharolobus solfataricus) [Search protein sequence]

KIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATV
ELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAI
DIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDK
TINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKE
LGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNN
YLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEK
ALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVD
AFSGRFIGDQLNEQLKKRIDEIKEK

3D structure

PDB

5gip Box C/D guide RNAs recognize a maximum of 10 nt of substrates

Chain

Resolution

3.129 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	L	K152 E159 R160 G299 A300 K302 A303 R306 R313 P314 P315 K316 H317 G318 F321 G335 K336 R339 A343 K344 R370 E373	K150 E157 R158 G297 A298 K300 A301 R304 R311 P312 P313 K314 H315 G316 F319 G333 K334 R337 A341 K342 R368 E371
BS02	rna	L	R145 T294 Q296 E301 F305	R143 T292 Q294 E299 F303
BS03	rna	L	N155 E159 H179 Q322 H327	N153 E157 H177 Q320 H325
BS04	rna	L	E301 K302 F305 R309	E299 K300 F303 R307

Gene Ontology

	Molecular Function
GO:0005515	protein binding
GO:0030515	snoRNA binding

	Cellular Component
GO:0031428	box C/D methylation guide snoRNP complex
GO:0032040	small-subunit processome

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Molecular Function

View graph for
Cellular Component

External links

PDB	RCSB:5gip, PDBe:5gip, PDBj:5gip
PDBsum	5gip
PubMed	27625427
UniProt	Q97ZH3

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